PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018443P2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 323aa    MW: 36673.9 Da    PI: 9.4978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018443P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.7e-17128217198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h  + +e+  ltl de+ ++++ k+  +k++    l++GW++F  +++L +gD +vF+l++ +ef  +v 
  MELO3C018443P2 128 FVKPMLQSHVSGGFWLGLPVRFCKTHL-P-HEDEILTLVDEDENEFQTKYLADKTG----LSGGWRGFSIDHQLVDGDALVFQLTSPTEF--KVY 214
                     89**********************994.2.34558***************666666....***********************9765555..998 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  MELO3C018443P2 215 IIR 217
                     887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-21119217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-24121217IPR015300DNA-binding pseudobarrel domain
CDDcd100174.34E-26126217No hitNo description
PROSITE profilePS5086311.702128219IPR003340B3 DNA binding domain
PfamPF023625.4E-15128217IPR003340B3 DNA binding domain
SMARTSM010197.8E-20128219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVESNLTYEE CRRQRLEENK KRMEELNLNK LADAFKSSSP KSSPTKQLKR PRQPFDVSSF  60
SVRRSSRFAD KPPMNYKEVP IEPLPGIRRS YQRRDLLNRI YASDEERQYA IDRALDLQSS  120
LESKYPSFVK PMLQSHVSGG FWLGLPVRFC KTHLPHEDEI LTLVDEDENE FQTKYLADKT  180
GLSGGWRGFS IDHQLVDGDA LVFQLTSPTE FKVYIIRTYN SVDKEDTKEG SDATQLESSG  240
KKNTKSSGHK TRANNSEDKG DIDEDSDVFQ LEKGGKKTTR SSRCKRSANK SEDKSDTGTD  300
SHDPQLGKTG KRITRSSSKG KK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454939.10.0PREDICTED: B3 domain-containing protein At3g19184-like isoform X1
SwissprotQ1G3M33e-86Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A0A0K4S80.0A0A0A0K4S8_CUCSA; Uncharacterized protein
STRINGPOPTR_0009s10590.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-82B3 family protein